Marine gas seeps, such as in the Panarea area near Sicily (McGinnis et al., 2011), emit large amounts of methane and carbon-dioxide, greenhouse gases. Better understanding their impact on the climate and the marine environment requires precise measurements of the gas flux. Camera based bubble measurement systems suffer from defocus blur caused by a combination of small depth of field, insufficient lighting and from motion blur due to rapid bubble movement. These adverse conditions are typical for open sea underwater bubble images. As a consequence so called ’bubble boxes’ have been built, which use elaborate setups, specialized cameras and high power illumination. A typical value of light power used is 1000W (Leifer et al., 2003). <br><br> In this paper we propose the compensation of defocus and motion blur in underwater images by using blind deconvolution techniques. The quality of the images can be greatly improved, which will relax requirements on bubble boxes, reduce their energy consumption and widen their usability.