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<front>
<journal-meta>
<journal-id journal-id-type="publisher">ISPRS-Archives</journal-id>
<journal-title-group>
<journal-title>The International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences</journal-title>
<abbrev-journal-title abbrev-type="publisher">ISPRS-Archives</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">2194-9034</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.5194/isprs-archives-XLIX-B2-2026-691-2026</article-id>
<title-group>
<article-title>Todo Fir Crown Instance Segmentation in Dense Plantation Forest Using Polar-FFT and Treetop Queries</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Iuchi</surname>
<given-names>Yusuke</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Nishiwaki</surname>
<given-names>Soki</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Takeuchi</surname>
<given-names>Fumio</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Takiya</surname>
<given-names>Mika</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Emaru</surname>
<given-names>Takanori</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
</contrib-group><aff id="aff1">
<label>1</label>
<addr-line>Graduate School of Engineering, Hokkaido University, Sapporo, Hokkaido, Japan</addr-line>
</aff>
<aff id="aff2">
<label>2</label>
<addr-line>Forestry Research Institute, Hokkaido Research Organization, Bibai, Hokkaido, Japan</addr-line>
</aff>
<aff id="aff3">
<label>3</label>
<addr-line>Faculty of Engineering, Hokkaido University, Sapporo, Hokkaido, Japan</addr-line>
</aff>
<pub-date pub-type="epub">
<day>23</day>
<month>07</month>
<year>2026</year>
</pub-date>
<volume>XLIX-B2-2026</volume>
<fpage>691</fpage>
<lpage>698</lpage>
<permissions>
<copyright-statement>Copyright: &#x000a9; 2026 Yusuke Iuchi et al.</copyright-statement>
<copyright-year>2026</copyright-year>
<license license-type="open-access">
<license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri"  xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p>
</license>
</permissions>
<self-uri xlink:href="https://isprs-archives.copernicus.org/articles/XLIX-B2-2026/691/2026/isprs-archives-XLIX-B2-2026-691-2026.html">This article is available from https://isprs-archives.copernicus.org/articles/XLIX-B2-2026/691/2026/isprs-archives-XLIX-B2-2026-691-2026.html</self-uri>
<self-uri xlink:href="https://isprs-archives.copernicus.org/articles/XLIX-B2-2026/691/2026/isprs-archives-XLIX-B2-2026-691-2026.pdf">The full text article is available as a PDF file from https://isprs-archives.copernicus.org/articles/XLIX-B2-2026/691/2026/isprs-archives-XLIX-B2-2026-691-2026.pdf</self-uri>
<abstract>
<p>Monitoring individual trees from unmanned aerial vehicle (UAV)-derived orthomosaics and digital surface models (DSMs) is important for forest management, but instance segmentation remains difficult in dense planted forests in Japan, where Structure from Motion (SfM)-derived DSMs often exhibit blurred crown boundaries, noise, and substantial variation in quality. Existing approaches can benefit from treetop information, but they are sensitive to threshold selection and may introduce false positives when incorrect treetop candidates are provided. To address this problem, we propose a method based on the polar coordinate transform and the fast Fourier transform (PFFT) that represents the local DSM shape around treetop candidates as compact descriptors and integrates them into Mask2Former. The descriptors are used both to suppress low-reliability candidates and to provide spatially meaningful treetop queries to the decoder, thereby improving the separation of adjacent crowns. We evaluated the method on &lt;em&gt;Abies sachalinensis&lt;/em&gt; (Todo fir) plantation data acquired at two sites in Hokkaido, Japan, using Mask R-CNN and Mask2Former as baselines. Compared with standard Mask2Former, the proposed method improved mAP&lt;sub&gt;50&lt;/sub&gt; from 90.14% to 90.87%, mAP&lt;sub&gt;75&lt;/sub&gt; from 52.18% to 55.47%, and the F1 score at a confidence threshold of 0.5 from 89.86% to 92.08%. It also reduced the number of false positives by 41% without increasing false negatives. Qualitative results showed fewer over-merged crowns and better crown-boundary delineation. These results indicate that treetop-centered local shape cues are effective for instance segmentation in densely planted forests, although further validation across additional species and regions is needed.</p>
</abstract>
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